Publications

preprints

published

1. Yohsuke Murase, Christian Hilbe
   “Indirect reciprocity with stochastic and dual reputation updates”
   PLOS Computational Biology 19(7): e1011271 (2023)
   • arXiv:2303.01373
   • press release
2. Yohsuke Murase, Seung Ki Baek
   “Grouping promotes both partnership and rivalry with long memory in direct reciprocity”
   PLoS Comp. Biol. 19(6): e1011228 (2023)
   • arXiv:2301.07539
3. Hiroyasu Inoue, Yohsuke Murase, Yasuyuki Todo
   “Lockdowns Need Geographic Coordination because of Propagation of Economic Effects through Supply Chains”
   Spatial Economic Analysis, 1-19 (2023)
   • SSRN:3759523
   • arXiv:2101.01679
4. Yohsuke Murase, Christian Hilbe, Seung Ki Baek
   “Evolution of direct reciprocity in group-structured populations”
   Scientific Reports, 12, 18645 (2022)
   • arXiv:2207.14061
5. Koji Oishi, Hiroto Ito, Yohsuke Murase, Hiroki Takikawa, Takuto Sakamoto
   “Evolution of global development cooperation: An analysis of aid flows with stochastic block models”
   Plos One, 17(8): e0272440 (2022)
   • arXiv:2204.02580
6. Sanghun Lee, Yohsuke Murase, Seung Ki Baek
   “A second-order perturbation theory for the continuous model of indirect reciprocity”
   Journal of Theoretical Biology, 548, 111202 (2022)
   • arXiv:2203.03920
7. Yohsuke Murase, Minjae Kim, Seung Ki Baek
   “Social norms in indirect reciprocity with ternary reputations”
   Scientific Reports, 12, 455 (2022)
   • arXiv:2109.09887
   • Source Code
   • Presentation
8. Yohsuke Murase, Hang-Hyun Jo, János Török, János Kertész, Kimmo Kaski
   “Deep Learning Exploration of Agent-Based Social Network Model Parameters”
   Frontiers in Big Data, 4, 86 (2021)
   • arXiv:2107.06507
   • Source Code
   • Visualization of the Result
   • Presentation
9. Yohsuke Murase, Seung Ki Baek
   “Friendly-rivalry solutions for direct reciprocity”
   Proceedings of the ALIFE 2021: The 2021 Conference on Artificial Life. ALIFE 2021: The 2021 Conference on Artificial Life. Online. (pp. 68). ASME. (2021)
   • Presentation
10. Hiroyasu Inoue, Yohsuke Murase, and Yasuyuki Todo
    “Do Economic Effects of the Anti-COVID-19 Lockdowns in Different Regions Interact Through Supply Chains?”
    Plos One, 16(7), e0255031 (2021)
    • SSRN:3692937
    • arXiv:2009.06894
    • COVID Economics Issue 56, 9 November 2020
11. Sanghun Lee, Yohsuke Murase, Seung Ki Baek
    “Local stability of cooperation in a continuous model of indirect reciprocity”
    Scientific Reports, 11, 14225 (2021)
    • arXiv:2104.02881
    • Source Code

12. János Kertész, János Török, Yohsuke Murase, Hang-Hyun Jo, Kimmo Kaski
    “Modeling the Complex Network of Social Interactions”
    In Pathways Between Social Science and Computational Social Science (pp. 3-19). Springer, Cham. (2021)

13. Yohsuke Murase, Seung Ki Baek
    “Friendly-rivalry solution to the iterated n-person public-goods game”
    Plos Computational Biology, 17(1): e1008217 (2021)
    • arXiv:2008.00243
    • Source Code
14. Yohsuke Murase, Seung Ki Baek
    “Five rules for friendly rivalry in direct reciprocity”
    Scientific Reports, 10, 16904 (2020)
    • arXiv:2004.00261
    • Source Code
15. Yohsuke Murase, Seung Ki Baek
    “Automata representation of successful strategies for social dilemmas”
    Scientific Reports, 10, 13370 (2020)
    • arXiv:1910.02634
    • Source Code
16. Shunki Takami, Masaki Onishi, Itsuki Noda, Kazunori Iwata, Nobuhiro Ito, Takeshi Uchitane, Yohsuke Murase
    “Infrastructure in Assessing Disaster-Relief Agents in the RoboCupRescue Simulation.”
    In: Lee R. (eds) Computational Science/Intelligence and Applied Informatics. CSII 2019. Studies in Computational Intelligence, vol 848. Springer, Cham (2020)
    • 10.1007/978-3-030-25225-0_10
17. Yohsuke Murase, Hiroyasu Matsushima, Itsuki Noda, Tomio Kamada “CARAVAN: a framework for comprehensive simulations on massive parallel machines”
    In: Lin D., Ishida T., Zambonelli F., Noda I. (eds) Massively Multi-Agent Systems II. MMAS 2018. Lecture Notes in Computer Science, vol 11422. Springer, Cham (2019)
    • 10.1007/978-3-030-20937-7_9
    • arXiv:1811.08801
    • Source Code
18. Yohsuke Murase, Hang-Hyun Jo, János Török, János Kertész, Kimmo Kaski “Sampling networks by nodal attributes”
    Physical Review E, 99, 052304 (2019)
    • 10.1103/PhysRevE.99.052304
    • arXiv:1902.04707
    • Source Code
19. Yohsuke Murase, Hang-Hyun Jo, János Török, János Kertész, Kimmo Kaski “Structural transition in social networks: The role of homophily”
    Scientific Reports, 9, 4310 (2019)
    • arXiv:1808.05035
    • Online Simulation Demo
20. János Kertész, János Török, Yohsuke Murase, Hang-Hyun Jo, Kimmo Kaski “Multiplex Modeling of the Society”
    A book chapter in “Multiplex and Multilevel Networks” edited by S. Battiston, G. Caldarelli, and A. Garas
    • arXiv:1609.08381

21. Itsuki Noda, Yohsuke Murase, Nobuyasu Ito, Kiyoshi Izumi, Hiromitsu Hattori, Tomio Kamada, Hideyuki Mizuta “Project CASSIA —Framework for Exhaustive and Large-Scale Social Simulation—”
    In: Sato M. (eds) Advanced Software Technologies for Post-Peta Scale Computing. Springer, Singapore, p271-299 (2019)

22. Y. Murase, P.A. Rikvold “Conservation of population size is required for self-organized criticality in evolution models”
    New J. Phys., 20, 083023 (2018)
    • arXiv:1808.03488
    • Online Simulation Demo
23. Y. Murase, S.K. Baek “Seven rules to avoid the tragedy of the commons”
    Journal of Theoretical Biology, 449, 94-102 (2018)
    • arXiv:1804.06984
    • Presentation
    • Source Code
24. Hang-Hyun Jo, Yohsuke Murase, János Török, János Kertész, Kimmo Kaski “Stylized Facts in Social Networks: Community-Based Static Modeling”
    Physica A, 500, 15 (2018) 23-39
    • arXiv:1611.03664
25. Y. Murase, T. Uchitane, N. Ito “An open-source job management framework for parameter-space exploration: OACIS”
    Journal of Physics: Conference Series, 921, 012001 (2017)
    • Presentation
    • Source Code

26. Shunki Takami, Kazuo Takayanagi, Shivashish Jaishy, Nobuhiro Ito, Kazunori Iwata, Yohsuke Murase, and Takeshi Uchitane “Proposed environment to support development and experiment in RoboCupRescue Simulation”
    RoboCup 2017: Robot World Cup XXI, p71-83 (2018)

27. János Török, Yohsuke Murase, Hang-Hyun Jo, János Kertész, Kimmo Kaski “What Big Data tells: Sampling the social network by communication channels”
    Physical Review E, 94, 052319 (2016)
    • arXiv:1511:08749
    • Presentation
    • 解説(in Japanese)

28. Itsuki Noda, Nobuyasu Ito, Kiyoshi Izumi, Tomohisa Yamashita, Hideki Mizuta, Tomio Kamada, Yohsuke Murase, Sachiko Yoshihama and Hiromitsu Hattori “Roadmap for Multiagent Social Simulation on HPC”
    Proceedings of 2015 IEEE/WIC/ACM International Conference on Web Intelligence and Intelligent Agent Technology (WI-IAT), vol.3, pp.22-25 (2015).
    DOI: 10.1109/WI-IAT.2015.178

29. Yohsuke Murase, Hang-Hyun Jo, János Török, János Kertész, Kimmo Kaski “Modeling the role of relationship fading and breakup in social network formation”
    PLoS ONE 10(7): e0133005. doi: 10.1371/journal.pone.0133005 (2015)
    • arXiv:1505.00644
    • Online Simulation Demo
    • featured by United Academics
    • 解説(in Japanese)
30. Yohsuke Murase, Takashi Shimada, Nobuyasu Ito, and Per Arne Rikvold “A Universal Lifetime Distribution for Multi-Species Systems”
    Proceedings of the International Conference on Social Modeling and Simulation, plus Econophysics Colloquium 2014 p.175-186 (2015)
    • arXiv:1502.00730

31. Takashi Shimada, Yohsuke Murase, and Nobuyasu Ito “Do connections make systems robust?: a new scenario for the complexity-stability”
    Proceedings of the International Conference on Social Modeling and Simulation, plus Econophysics Colloquium 2014 p.99-109 (2015)

32. Yohsuke Murase, János Török, Hang-Hyun Jo, Kimmo Kaski, János Kertész “Multilayer weighted social network model”
    Physical Review E, 90, (2014) 052810 (8 pages)
    • arXiv:1408.1190
    • Presentation
33. Yohsuke Murase, Takeshi Uchitane, and Nobuyasu Ito “A tool for parameter-space exploration”
    Physics Procedia 57 pp. 73-76 (2014) 10.1016/j.phpro.2014.08.134
    • arXiv:1404.3867
34. Yohsuke Murase, Takashi Shimada, and Nobuyasu Ito “A simple model for skewed species-lifetime distributions”
    New Journal of Physics, vol. 12(2010) 063021(9pages)
    • Selected as the New Journal of Physics Best of 2010
35. Yohsuke Murase, Takashi Shimada, Nobuyasu Ito and Per Arne Rikvold “Effects of demographic stochasticity on biological community assembly on evolutionary time scales”
    Physical Review E, 81 (2010) 041908 (14pages)
    • arXiv:1001.4584
36. Yohsuke Murase, Takashi Shimada, Nobuyasu Ito and Per Arne Rikvold “Random walk in genome space: A key ingredient of intermittent dynamics of community assembly on evolutionary time scales”
    Journal of Theoretical Biology, vol.264 (2010) 663 (10 pages)
    • arXiv:1001.4226

37. Yohsuke Murase, Takashi Shimada, Satoshi Yukawa and Nobuyasu Ito “Phase transition from poor to diverse ecosystems”
    Physics Procedia, 7, (2010) 72 (4 pages)

38. Yohsuke Murase, Takashi Shimada, Nobuyasu Ito and Per Arne Rikvold “Effects of Stochastic Population Fluctuations in Two Models of Biological Macroevolution”
    Physics Procedia, 6, (2010) 76 (4 pages)
    • arXiv:0803.1372

39. Yohsuke Murase, Takashi Shimada and Nobuyasu Ito “Phase diagram and stability of ecosystems”
    Artificial Life and Robotics, vol.13 (2009) 460 (4 pages)

40. Yohsuke Murase and Nobuyasu Ito “Dynamic critical exponents of three-dimensional Ising models and two-dimensional three state Potts models”
    Journal of the Physical Society of Japan, Vol.77, No.1 (2008), 014002 (5 pages)

41. Takashi Shimada, Yosuke Murase, Nobuyasu Ito and Kazuyuki Aihara “A simple model of evolving ecosystems”
    Artificial Life and Robotics, vo. 11(2007) p153 (4 pages)

42. Takao Someya, Yusaku Kato, Tsuyoshi Sekitani, Shingo Iba, Yoshiaki Noguchi, Yousuke Murase, Hiroshi Kawaguchi, and Takayasu Sakurai “Conformable, flexible, large-area networks of pressure and thermal sensors with organic transistor active matrixes”
    Proc. Nat. Acad. Sci., Vol. 102, Issue 35 (2005) p12321 (5 pages)

日本語の解説など

1. 島田尚, 村瀬洋介, 小串典子 「“生態系”諸行無常と頑健性の統計物理学」
   生物物理 58(5), 241-244 (2018), DOI: 10.2142/biophys.58.241

2. 村瀬洋介, 内種岳詞, 伊藤伸泰 「パラメータ空間探索フレームワークOACISの紹介」
   分子シミュレーション研究会会誌アンサンブル 20(4), 247-252 (2018)